Cellphonedb.org
WebWe would like to show you a description here but the site won’t allow us. WebJun 24, 2024 · Cell-cell communication mediated by receptor-ligand complexes is crucial for coordinating diverse biological processes, such as development, differentiation and responses to infection. In order to understand how the context-dependent crosstalk of different cell types enables physiological processes to proceed, we developed …
Cellphonedb.org
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WebFeb 26, 2024 · CellPhoneDB v.2.0 is an updated version of our resource that incorporates additional functionalities to enable users to introduce … WebFeb 25, 2024 · CellPhoneDB was created for scRNA-seq but can be used for other types of data, for example bulk RNA-seq data from pure cell populations. 4. CellphoneDB was created using human-specific ligand–receptor interactions, but it can also be applied on datasets from other species by using orthologs. 5.
WebCellPhoneDB What is CellPhoneDB? CellPhoneDB is a publicly available repository of curated receptors, ligands and their interactions in HUMAN.CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own single-cell transcriptomics data (or even bulk transcriptomics data if your samples represent pure populations!). WebApr 23, 2024 · CellPhoneDB区分不了受体还是配体，对于gene1-gene2，可以是gene1配体gene2受体，也可以是gene1受体gene2配体。我个人觉得也是由于这个原因，右边那个热图为了说起来方便，才把不管做受体还是做配体的关系都算作是两种细胞的互作关系，因此A-B和B-A在热图中的数值是 ...
WebNov 15, 2024 · To systematically study the interactions between fetal and maternal cells in the decidual–placental interface, we developed a repository (www.CellPhoneDB.org) of ligand–receptor interacting ... WebMar 28, 2024 · Users can submit their lists using the Python package version of CellphoneDB, and then send them via [email protected] or a pull request to the CellphoneDB data repository. Plotting results. Currently CellPhoneDB relies on external plotting implementations to represent the results.
WebMay 19, 2024 · To enable a systematic analysis of cell-cell communication, we used CellPhoneDB (Vento-Tormo et al., 2024). CellPhoneDB is a manual curated repository of ligands, receptors and their interactions, integrated with a statistical framework for inferring cell-cell communication networks from single cell transcriptome data.
WebMay 13, 2024 · 常用的细胞通讯软件： CellphoneDB：是公开的人工校正的，储存受体、配体以及两种相互作用的数据库。此外，还考虑了结构组成，能够描述异构复合物。（配体-受体+多聚体） iTALK：通过平均表达量方式，筛选高表达的胚体和受体，根据结果作圈图。（配体-受体） horno solar historiaWebJun 5, 2024 · where each row is a sample, the location of the out folder generated by cellphonedb and a single-cell object used to generate the cellphonedb result. If cellphonedb was ran with a .h5ad the sce_file would be the path to the .h5ad file. and 2) a sample metadata data frame for the tests to run: covid_sample_metadata. horno tedgeWebNov 15, 2024 · 11月15日，来自英国剑桥桑格研究所（Wellcome Sanger Institute）的研究人员在Nature上以长文形式发表了题为Single-cell reconstruction of the early maternal–fetal interface in humans的研究成果，利用妊娠早期胎盘的约7万个细胞进行单细胞测序并绘制了图谱，为理解人类妊娠早期的细胞组织和细胞通讯带来了新见解。 horn osteopathWebMar 2, 2024 · 研究者们为了系统地研究蜕膜-胎盘界面中胎儿和母体细胞之间的相互作用，作者开发了一个配体-受体相互作用的数据库（www.CellPhoneDB.org），该数据库可以预测分析不同细胞类型之间的分子相互作用。 因为图很炫酷，所以风靡开来，也产生了多种同类型 … hornos reductoresWebTo explore the crosstalk between neutrophils and other immune cells in tumour microenvironment, we applied CellPhoneDB, an interactive web application that infers cellular interactions according to ligand-receptor signalling database. 30 Notably, compared with other types of immune cells, macrophages expressed significantly higher number of ... hornos historiaWebJun 10, 2024 · 单细胞. cellphoneDB. cellphoneDB 单细胞分析之细胞间通讯分析. cellphoneDB是目前使用较为广泛的细胞通讯分析软件，包含配体、受体及其相互作用的数据库，可以对细胞间的通讯分子进行全面、系统的分析，以及研究不同细胞类型之间的相互交流及通讯网络。. 数据库 ... horno teka hsb635 caracteristicasWeb定位和研究这些配体-受体相互作用对理解细胞行为和复杂的生物学过程有着极其重要的意义。. CellPhoneDB 简介 为了研究不同细胞类型间的细胞通讯网络如何使生理过程得以进行的，英国 Sanger 研究所的 Teichmann 实验室和 Vento-Tormo 实验室联合开发了 CellPhoneDB ... horno thermo scientific heratherm manual